Brazilian Journal of Biological Sciences (ISSN 2358-2731)

Home Archive v. 6, no. 14 (2019) Raji


Vol. 6, No. 14, p. 557-564 - Dec. 31, 2019


Microbial communities and activities in caves

Ramat Onyeneoyiza Raji , Oluwafemi Adebayo Oyewole , Omeiza Haruna Ibrahim , Yetunde Noimot Tijani and Mordecai Gana

Caves are natural aperture and oligotrophic extreme environment for psychrophilic and psychrotolerant microorganisms. Microorganisms found in caves can be indigenous to the caves or introduced by humans, animals, water flow and wind action. Group of microorganisms found in caves are bacteria, fungi, protozoa, algae and viruses. However, bacteria and fungi are the dominant microorganisms. Cave microorganisms are metabolically diverse and are able to acquire energy independently through photoautotrophic, chemoautotrophic or heterotrophic activities. Different microbial groups also interact in the formation of cave and as part of the biogeochemical cycling of elements. Cave microbiology has allowed the detection of microorganisms with the potentials to produce different biomolecules for industrial, pharmaceutical, environmental and biotechnological purposes.

Cave; Psychrotrophic microorganisms; Psychrotolerant microorganisms; Biogeochemical cycling.


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Adetutu, E. M.; Ball, A. S. Microbial diversity and activity in caves. Microbiology Australia, v. 35, no. 4, p. 192-194, 2014.

Adetutu, E. M.; Thorpe, K.; Bourne, S.; Cao, X.; Shahsavari, E.; Kirby, G.; Ball, A. S. Phylogenetic diversity of fungal communities in areas accessible and not accessible to tourists in Naracoorte Caves. Mycologia, v. 103, no. 5, p. 959-968, 2011.

Czerwik-Marcinkowska, J; Mrozińska, T. Algae and cyanobacteria in caves of the Polish Jura. Polish Botanical Journal, v. 56, no. 2, p. 203-243, 2011.

Engel, A. S.; Meisinger, D. B.; Porter, M. L.; Payn, R. A.; Schmid, M.; Stern, L. A.; Lee, N. M. Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA). The ISME Journal, v. 4, no. 1, p. 98-110, 2010.

Engel, A. S.; Stern, L. A.; Bennett, P. C. Microbial contributions to cave formation: New insights into sulfuric acid speleogenesis. Geology, v. 32, no. 5, p. 369-372, 2004.

Gherman, V. D.; Boboescu, I. Z.; Pap, B.; Kondorosi, E.; Gherman, G.; Maroti, G. An acidophilic bacterial-archaeal-fungal ecosystem linked to formation of ferruginous crusts and stalactites. Geomicrobiology Journal, v. 31, no. 5, p. 407-418, 2014.

Huber, K. J.; Wüst, P. K.; Rohde, M.; Overmann, J.; Foesel, B. U. Aridibacter famidurans gen. nov., sp. nov. and Aridibacter kavangonensis sp. nov., two novel members of subdivision 4 of the Acidobacteria isolated from semiarid savannah soil. International Journal of Systematic and Evolutionary Microbiology, v. 64, no. 6, p. 1866-1875, 2014.

Ikner, L. A.; Toomey, R. S.; Nolan, G.; Neilson, J. W.; Pryor, B. M.; Maier, R. M. Culturable microbial diversity and the impact of tourism in Kartchner Caverns, Arizona. Microbial Ecology, v. 53, no. 1, p. 30-42, 2007.

Jones, A. A.; Bennett, P. C. Mineral microniches control the diversity of subsurface microbial populations. Geomicrobiology Journal, v. 31, no. 3, p. 246-261, 2014.

Jurado, V.; Boiron, P.; Kroppenstedt, R. M.; Laurent, F.; Couble, A.; Laiz, L.; Bergeron, E. Nocardia altamirensis sp. nov., isolated from Altamira Cave, Cantabria, Spain. International Journal of Systematic and Evolutionary Microbiology, v. 58, no. 9, p. 2210-2214, 2008.

Jurado, V.; Laiz, L.; Rodriguez-Nava, V.; Boiron, P.; Hermosin, B.; Sanchez-Moral, S.; Saiz-Jimenez, C. Pathogenic and opportunistic microorganisms in caves. International Journal of Speleology, v. 39, p.15-21, 2010.

Kunisawa, T. Evaluation of the phylogenetic position of the sulfate-reducing bacterium Thermodesulfovibrio yellowstonii (Phylum Nitrospirae) by means of gene order data from completely sequenced genomes. International Journal of Systemic and Evolutionary Microbiology, v. 60, no. 5, p. 1090-1102, 2010.

Lee, N. M.; Meisinger, D. B.; Aubrecht, R.; Kovacik, L.; Saiz-Jimenez, C.; Baskar, S.; Baskar, R.; Liebl, W.; Porter, M. L.; Engel, A. S. Caves and karst environments. In: Bell, E. M. (Ed.). Life at extremes: Environment, organisms, and strategies for survival. Cambridge: CAB International, 2012. p. 320-344.

Legatzki, A.; Orttiz, M.; Neilson, J. W.; Dominguez, S.; Andersen, G. L.; Toomey, R. S.; Maier, R. M. Bacterial and archaeal community structure of two adjacent calcite speleothems in Kartchner Caverns, Arizona, USA. Geomicrobiology Journal, v. 28, no. 2, p. 99-117, 2011.

Li, L.; Victoria, J. G.; Wang, C.; Jones, M.; Fellers, G. M.; Kunz, T. H.; Delwart, E. Bat guano virome: Predominance of dietary viruses from insects and plants plus novel mammalian viruses. Journal of Virology, v. 84, no. 14, p. 6955-6965, 2010.

Minnis, A. M.; Lindner, D. L. Phylogenetic evaluation of Geomyces and allies reveals no close relatives of Pseudogymnoascus destructans, comb. nov., in bat hibernacula of Eastern North America. Fungal Biology, v. 117, no. 9, p. 638-649, 2013.

Mulec, J.; Walochnik, J. Amoeba in carbonate precipitating microenvironments in karst caves. Geophysical Research Abstracts, v. 9, 2007.

Mulec, J.; Krištůfek, V.; Chroňáková, A. Comparative microbial sampling from eutrophic caves in Slovenia and Slovakia using RIDA® COUNT test kits. International Journal of Speleology, v. 41, no. 1, p. 1-8, 2012.

Northup, D. E.; Barns, S. M.; Yu, L. E.; Spilde, M. N.; Schelble, R. T.; Dano, K. E.; Dahm, C. N. Diverse microbial communities inhabiting ferromanganese deposits in Lechuguilla and Spider Caves. Environmental Microbiology, v. 5, no. 11, p. 1071-1086, 2003.

Northup, D. E.; Dahm, C. N.; Melim, L. A.; Spilde, M. N.; Crossey, L. J.; Lavoie, K. H.; Mallory, L. M.; Boston, P. J.; Cunningham, K. I.; Barns, S. M. Evidence for geomicrobiological interactions in Guadalupe caves. Journal of Cave and Karst Studies, v. 62, no. 2, p. 80-90, 2000.

Palaniyandi, S. A.; Yang, S. H.; Zhang, L.; Suh, J. W. Effects of actinobacteria on plant disease suppression and growth promotion. Applied Microbiology and Biotechnology, v. 97, no. 22, p. 9621-9636, 2013.

Quan, P. L.; Firth, C.; Street, C.; Henriquez, J. A.; Petrosov, A.; Tashmukhamedova, A.; Hutchison, S. K.; Egholm, M.; Osinubi, M. O.; Niezgoda, M.; Ogunkoya, A. B.; Briese, T.; Rupprecht, C. E.; Lipkin, W. I. Identification of a severe acute respiratory syndrome coronavirus-like virus in a leaf-nosed bat in Nigeria. mBio, v. 1, no.4, e00208-10, 2010.

Saiz-Jimenez, C. Microbiological and environmental issues in show caves. World Journal of Microbiology and Biotechnology, v. 28, no. 7, p. 2453-2464, 2012.

Shapiro, J.; Pringle, A. Anthropogenic influences on the diversity of fungi isolated from caves in Kentucky and Tennessee. The American Midland Naturalist, v. 163, no. 1, p. 76-86, 2010.

Tkavc, R. Identification and genotypization of entomopathogenic fungi isolated from troglophile moths Scoliopteryx libatrix L. and Triphosa dubitata L. Ljubljana: University of Ljubljana, Biotechnical Faculty, 2007. (Graduation theseis).

Tomczyk-Żak, K.; Zielenkiewicz, U. Microbial diversity in caves. Geomicrobiology Journal, v. 33, no. 1, p. 20-38, 2016.

Tomova, I.; Lazarkevich, I.; Tomova, A.; Kambourova, M.; Vasileva-Tonkova, E. Diversity and biosynthetic potential of culturable aerobic heterotrophic bacteria isolated from Magura Cave, Bulgaria. International Journal of Speleology, v. 42, no. 1, p. 65-76, 2013.

Vanderwolf, K. J.; Malloch, D.; McAlpine, D. F.; Forbes, G. J. A world review of fungi, yeasts, and slime molds in caves. International Journal of Speleology, v. 42, no. 1, p. 77-96, 2013.

Walochnik, J.; Mulec, J. Free living amoebae in carbonate precipitating microhabitats of karst caves and a new vahlkampfiid amoeba, Allovahlkampfia spelaea gen. nov. Acta Protozoologica, v. 48, no. 1, p. 25-33, 2015.

Wiseschart, A.; Mhuanthong, W.; Thongkam, P.; Tangphatsornruang, S.; Chantasingh, D.; Pootanakit, K. Bacterial diversity and phylogenetic analysis of type II polyketide synthase gene from Manao-Pee Cave. Geomicrobiology Journal, v. 35, no. 6, p. 518-527, 2018.

Yucel, S. E.; Yamac, M. U. Selection of Streptomyces isolates from Turkish Karstic caves against antibiotic resistant microorganisms. Pakistan Journal of Pharmaceutical Sciences, v. 23, no. 1, p. 1-6, 2010.

Zhou, J. P.; Gu, Y. Q.; Zou, C. S.; Mo, M. H. Phylogenetic diversity of bacteria in an earth-cave in Guizhou Province, Southwest of China. Journal of Microbiology, v. 45, no. 2, p. 105-112, 2007.

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